Ответ 1
PyPM - это хороший способ установить его. Версия представляет собой бета-версию 0.10.1 и включает в себя все зависимости. Вам нужно Active Python для доступа к PyPM, но вы должны легко установить его.
pypm install scipi
Установка SciPy/Python на Ubuntu
В настоящее время я следую учебнику Установка стека SciPy для установки SciPy на Ubuntu 12.04 (Точный панголин) (я не могу использовать apt-get install, потому что мне нужна последняя версия).
Однако я получаю ошибки, когда выполняю следующие команды:
python setup.py build
sudo python setup.py install --prefix=/usr/local # Installs to /usr/local
python setup.py build
[email protected]:~/Downloads/scipy-0.11.0rc1$ python setup.py buildRunning from scipy source directory.
blas_opt_info:
blas_mkl_info:
libraries mkl,vml,guide not found in /usr/local/lib
libraries mkl,vml,guide not found in /usr/lib
libraries mkl,vml,guide not found in /usr/lib/i386-linux-gnu
NOT AVAILABLE
atlas_blas_threads_info:
Setting PTATLAS=ATLAS
libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib
libraries ptf77blas,ptcblas,atlas not found in /usr/lib/sse2
libraries ptf77blas,ptcblas,atlas not found in /usr/lib
libraries ptf77blas,ptcblas,atlas not found in /usr/lib/i386-linux-gnu/sse2
libraries ptf77blas,ptcblas,atlas not found in /usr/lib/i386-linux-gnu
NOT AVAILABLE
atlas_blas_info:
libraries f77blas,cblas,atlas not found in /usr/local/lib
libraries f77blas,cblas,atlas not found in /usr/lib/sse2
libraries f77blas,cblas,atlas not found in /usr/lib
libraries f77blas,cblas,atlas not found in /usr/lib/i386-linux-gnu/sse2
libraries f77blas,cblas,atlas not found in /usr/lib/i386-linux-gnu
NOT AVAILABLE
/usr/lib/python2.7/dist-packages/numpy/distutils/system_info.py:1423: UserWarning:
Atlas (http://math-atlas.sourceforge.net/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [atlas]) or by setting
the ATLAS environment variable.
warnings.warn(AtlasNotFoundError.__doc__)
blas_info:
libraries blas not found in /usr/local/lib
libraries blas not found in /usr/lib
libraries blas not found in /usr/lib/i386-linux-gnu
NOT AVAILABLE
/usr/lib/python2.7/dist-packages/numpy/distutils/system_info.py:1432: UserWarning:
Blas (http://www.netlib.org/blas/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [blas]) or by setting
the BLAS environment variable.
warnings.warn(BlasNotFoundError.__doc__)
blas_src_info:
NOT AVAILABLE
/usr/lib/python2.7/dist-packages/numpy/distutils/system_info.py:1435: UserWarning:
Blas (http://www.netlib.org/blas/) sources not found.
Directories to search for the sources can be specified in the
numpy/distutils/site.cfg file (section [blas_src]) or by setting
the BLAS_SRC environment variable.
warnings.warn(BlasSrcNotFoundError.__doc__)
Traceback (most recent call last):
File "setup.py", line 208, in <module>
setup_package()
File "setup.py", line 199, in setup_package
configuration=configuration )
File "/usr/lib/python2.7/dist-packages/numpy/distutils/core.py", line 152, in setup
config = configuration()
File "setup.py", line 136, in configuration
config.add_subpackage('scipy')
File "/usr/lib/python2.7/dist-packages/numpy/distutils/misc_util.py", line 1002, in add_subpackage
caller_level = 2)
File "/usr/lib/python2.7/dist-packages/numpy/distutils/misc_util.py", line 971, in get_subpackage
caller_level = caller_level + 1)
File "/usr/lib/python2.7/dist-packages/numpy/distutils/misc_util.py", line 908, in _get_configuration_from_setup_py
config = setup_module.configuration(*args)
File "scipy/setup.py", line 8, in configuration
config.add_subpackage('integrate')
File "/usr/lib/python2.7/dist-packages/numpy/distutils/misc_util.py", line 1002, in add_subpackage
caller_level = 2)
File "/usr/lib/python2.7/dist-packages/numpy/distutils/misc_util.py", line 971, in get_subpackage
caller_level = caller_level + 1)
File "/usr/lib/python2.7/dist-packages/numpy/distutils/misc_util.py", line 908, in _get_configuration_from_setup_py
config = setup_module.configuration(*args)
File "scipy/integrate/setup.py", line 10, in configuration
blas_opt = get_info('blas_opt',notfound_action=2)
File "/usr/lib/python2.7/dist-packages/numpy/distutils/system_info.py", line 320, in get_info
return cl().get_info(notfound_action)
File "/usr/lib/python2.7/dist-packages/numpy/distutils/system_info.py", line 471, in get_info
raise self.notfounderror(self.notfounderror.__doc__)
numpy.distutils.system_info.BlasNotFoundError:
Blas (http://www.netlib.org/blas/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [blas]) or by setting
the BLAS environment variable.
Error in sys.excepthook:
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/apport_python_hook.py", line 64, in apport_excepthook
from apport.fileutils import likely_packaged, get_recent_crashes
File "/usr/lib/python2.7/dist-packages/apport/__init__.py", line 1, in <module>
from apport.report import Report
File "/usr/lib/python2.7/dist-packages/apport/report.py", line 18, in <module>
import problem_report
File "/usr/lib/python2.7/dist-packages/problem_report.py", line 14, in <module>
import zlib, base64, time, sys, gzip, struct, os
File "/usr/lib/python2.7/gzip.py", line 10, in <module>
import io
File "/home/michael/Downloads/scipy-0.11.0rc1/scipy/io/__init__.py", line 83, in <module>
from matlab import loadmat, savemat, byteordercodes
File "/home/michael/Downloads/scipy-0.11.0rc1/scipy/io/matlab/__init__.py", line 11, in <module>
from mio import loadmat, savemat
File "/home/michael/Downloads/scipy-0.11.0rc1/scipy/io/matlab/mio.py", line 15, in <module>
from mio4 import MatFile4Reader, MatFile4Writer
File "/home/michael/Downloads/scipy-0.11.0rc1/scipy/io/matlab/mio4.py", line 9, in <module>
import scipy.sparse
File "/home/michael/Downloads/scipy-0.11.0rc1/scipy/sparse/__init__.py", line 180, in <module>
from csr import *
File "/home/michael/Downloads/scipy-0.11.0rc1/scipy/sparse/csr.py", line 12, in <module>
from sparsetools import csr_tocsc, csr_tobsr, csr_count_blocks, \
File "/home/michael/Downloads/scipy-0.11.0rc1/scipy/sparse/sparsetools/__init__.py", line 4, in <module>
from csr import *
File "/home/michael/Downloads/scipy-0.11.0rc1/scipy/sparse/sparsetools/csr.py", line 25, in <module>
_csr = swig_import_helper()
File "/home/michael/Downloads/scipy-0.11.0rc1/scipy/sparse/sparsetools/csr.py", line 17, in swig_import_helper
import _csr
ImportError: No module named _csr
Original exception was:
Traceback (most recent call last):
File "setup.py", line 208, in <module>
setup_package()
File "setup.py", line 199, in setup_package
configuration=configuration )
File "/usr/lib/python2.7/dist-packages/numpy/distutils/core.py", line 152, in setup
config = configuration()
File "setup.py", line 136, in configuration
config.add_subpackage('scipy')
File "/usr/lib/python2.7/dist-packages/numpy/distutils/misc_util.py", line 1002, in add_subpackage
caller_level = 2)
File "/usr/lib/python2.7/dist-packages/numpy/distutils/misc_util.py", line 971, in get_subpackage
caller_level = caller_level + 1)
File "/usr/lib/python2.7/dist-packages/numpy/distutils/misc_util.py", line 908, in _get_configuration_from_setup_py
config = setup_module.configuration(*args)
File "scipy/setup.py", line 8, in configuration
config.add_subpackage('integrate')
File "/usr/lib/python2.7/dist-packages/numpy/distutils/misc_util.py", line 1002, in add_subpackage
caller_level = 2)
File "/usr/lib/python2.7/dist-packages/numpy/distutils/misc_util.py", line 971, in get_subpackage
caller_level = caller_level + 1)
File "/usr/lib/python2.7/dist-packages/numpy/distutils/misc_util.py", line 908, in _get_configuration_from_setup_py
config = setup_module.configuration(*args)
File "scipy/integrate/setup.py", line 10, in configuration
blas_opt = get_info('blas_opt',notfound_action=2)
File "/usr/lib/python2.7/dist-packages/numpy/distutils/system_info.py", line 320, in get_info
return cl().get_info(notfound_action)
File "/usr/lib/python2.7/dist-packages/numpy/distutils/system_info.py", line 471, in get_info
raise self.notfounderror(self.notfounderror.__doc__)
numpy.distutils.system_info.BlasNotFoundError:
Blas (http://www.netlib.org/blas/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [blas]) or by setting
the BLAS environment variable.
sudo python setup.py install --prefix =/usr/local # устанавливает в /usr/local
[email protected]:~/Downloads/scipy-0.11.0rc1$ sudo python setup.py install --prefix=/usr/local
[sudo] password for michael:
Running from scipy source directory.
blas_opt_info:
blas_mkl_info:
libraries mkl,vml,guide not found in /usr/local/lib
libraries mkl,vml,guide not found in /usr/lib
libraries mkl,vml,guide not found in /usr/lib/i386-linux-gnu
NOT AVAILABLE
atlas_blas_threads_info:
Setting PTATLAS=ATLAS
libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib
libraries ptf77blas,ptcblas,atlas not found in /usr/lib/sse2
libraries ptf77blas,ptcblas,atlas not found in /usr/lib
libraries ptf77blas,ptcblas,atlas not found in /usr/lib/i386-linux-gnu/sse2
libraries ptf77blas,ptcblas,atlas not found in /usr/lib/i386-linux-gnu
NOT AVAILABLE
atlas_blas_info:
libraries f77blas,cblas,atlas not found in /usr/local/lib
libraries f77blas,cblas,atlas not found in /usr/lib/sse2
libraries f77blas,cblas,atlas not found in /usr/lib
libraries f77blas,cblas,atlas not found in /usr/lib/i386-linux-gnu/sse2
libraries f77blas,cblas,atlas not found in /usr/lib/i386-linux-gnu
NOT AVAILABLE
/usr/lib/python2.7/dist-packages/numpy/distutils/system_info.py:1423: UserWarning:
Atlas (http://math-atlas.sourceforge.net/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [atlas]) or by setting
the ATLAS environment variable.
warnings.warn(AtlasNotFoundError.__doc__)
blas_info:
libraries blas not found in /usr/local/lib
libraries blas not found in /usr/lib
libraries blas not found in /usr/lib/i386-linux-gnu
NOT AVAILABLE
/usr/lib/python2.7/dist-packages/numpy/distutils/system_info.py:1432: UserWarning:
Blas (http://www.netlib.org/blas/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [blas]) or by setting
the BLAS environment variable.
warnings.warn(BlasNotFoundError.__doc__)
blas_src_info:
NOT AVAILABLE
/usr/lib/python2.7/dist-packages/numpy/distutils/system_info.py:1435: UserWarning:
Blas (http://www.netlib.org/blas/) sources not found.
Directories to search for the sources can be specified in the
numpy/distutils/site.cfg file (section [blas_src]) or by setting
the BLAS_SRC environment variable.
warnings.warn(BlasSrcNotFoundError.__doc__)
Traceback (most recent call last):
File "setup.py", line 208, in <module>
setup_package()
File "setup.py", line 199, in setup_package
configuration=configuration )
File "/usr/lib/python2.7/dist-packages/numpy/distutils/core.py", line 152, in setup
config = configuration()
File "setup.py", line 136, in configuration
config.add_subpackage('scipy')
File "/usr/lib/python2.7/dist-packages/numpy/distutils/misc_util.py", line 1002, in add_subpackage
caller_level = 2)
File "/usr/lib/python2.7/dist-packages/numpy/distutils/misc_util.py", line 971, in get_subpackage
caller_level = caller_level + 1)
File "/usr/lib/python2.7/dist-packages/numpy/distutils/misc_util.py", line 908, in _get_configuration_from_setup_py
config = setup_module.configuration(*args)
File "scipy/setup.py", line 8, in configuration
config.add_subpackage('integrate')
File "/usr/lib/python2.7/dist-packages/numpy/distutils/misc_util.py", line 1002, in add_subpackage
caller_level = 2)
File "/usr/lib/python2.7/dist-packages/numpy/distutils/misc_util.py", line 971, in get_subpackage
caller_level = caller_level + 1)
File "/usr/lib/python2.7/dist-packages/numpy/distutils/misc_util.py", line 908, in _get_configuration_from_setup_py
config = setup_module.configuration(*args)
File "scipy/integrate/setup.py", line 10, in configuration
blas_opt = get_info('blas_opt',notfound_action=2)
File "/usr/lib/python2.7/dist-packages/numpy/distutils/system_info.py", line 320, in get_info
return cl().get_info(notfound_action)
File "/usr/lib/python2.7/dist-packages/numpy/distutils/system_info.py", line 471, in get_info
raise self.notfounderror(self.notfounderror.__doc__)
numpy.distutils.system_info.BlasNotFoundError:
Blas (http://www.netlib.org/blas/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [blas]) or by setting
the BLAS environment variable.
Error in sys.excepthook:
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/apport_python_hook.py", line 64, in apport_excepthook
from apport.fileutils import likely_packaged, get_recent_crashes
File "/usr/lib/python2.7/dist-packages/apport/__init__.py", line 1, in <module>
from apport.report import Report
File "/usr/lib/python2.7/dist-packages/apport/report.py", line 18, in <module>
import problem_report
File "/usr/lib/python2.7/dist-packages/problem_report.py", line 14, in <module>
import zlib, base64, time, sys, gzip, struct, os
File "/usr/lib/python2.7/gzip.py", line 10, in <module>
import io
File "/home/michael/Downloads/scipy-0.11.0rc1/scipy/io/__init__.py", line 83, in <module>
from matlab import loadmat, savemat, byteordercodes
File "/home/michael/Downloads/scipy-0.11.0rc1/scipy/io/matlab/__init__.py", line 11, in <module>
from mio import loadmat, savemat
File "/home/michael/Downloads/scipy-0.11.0rc1/scipy/io/matlab/mio.py", line 15, in <module>
from mio4 import MatFile4Reader, MatFile4Writer
File "/home/michael/Downloads/scipy-0.11.0rc1/scipy/io/matlab/mio4.py", line 9, in <module>
import scipy.sparse
File "/home/michael/Downloads/scipy-0.11.0rc1/scipy/sparse/__init__.py", line 180, in <module>
from csr import *
File "/home/michael/Downloads/scipy-0.11.0rc1/scipy/sparse/csr.py", line 12, in <module>
from sparsetools import csr_tocsc, csr_tobsr, csr_count_blocks, \
File "/home/michael/Downloads/scipy-0.11.0rc1/scipy/sparse/sparsetools/__init__.py", line 4, in <module>
from csr import *
File "/home/michael/Downloads/scipy-0.11.0rc1/scipy/sparse/sparsetools/csr.py", line 25, in <module>
_csr = swig_import_helper()
File "/home/michael/Downloads/scipy-0.11.0rc1/scipy/sparse/sparsetools/csr.py", line 17, in swig_import_helper
import _csr
ImportError: No module named _csr
Original exception was:
Traceback (most recent call last):
File "setup.py", line 208, in <module>
setup_package()
File "setup.py", line 199, in setup_package
configuration=configuration )
File "/usr/lib/python2.7/dist-packages/numpy/distutils/core.py", line 152, in setup
config = configuration()
File "setup.py", line 136, in configuration
config.add_subpackage('scipy')
File "/usr/lib/python2.7/dist-packages/numpy/distutils/misc_util.py", line 1002, in add_subpackage
caller_level = 2)
File "/usr/lib/python2.7/dist-packages/numpy/distutils/misc_util.py", line 971, in get_subpackage
caller_level = caller_level + 1)
File "/usr/lib/python2.7/dist-packages/numpy/distutils/misc_util.py", line 908, in _get_configuration_from_setup_py
config = setup_module.configuration(*args)
File "scipy/setup.py", line 8, in configuration
config.add_subpackage('integrate')
File "/usr/lib/python2.7/dist-packages/numpy/distutils/misc_util.py", line 1002, in add_subpackage
caller_level = 2)
File "/usr/lib/python2.7/dist-packages/numpy/distutils/misc_util.py", line 971, in get_subpackage
caller_level = caller_level + 1)
File "/usr/lib/python2.7/dist-packages/numpy/distutils/misc_util.py", line 908, in _get_configuration_from_setup_py
config = setup_module.configuration(*args)
File "scipy/integrate/setup.py", line 10, in configuration
blas_opt = get_info('blas_opt',notfound_action=2)
File "/usr/lib/python2.7/dist-packages/numpy/distutils/system_info.py", line 320, in get_info
return cl().get_info(notfound_action)
File "/usr/lib/python2.7/dist-packages/numpy/distutils/system_info.py", line 471, in get_info
raise self.notfounderror(self.notfounderror.__doc__)
numpy.distutils.system_info.BlasNotFoundError:
Blas (http://www.netlib.org/blas/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [blas]) or by setting
the BLAS environment variable.
Кроме того, как проверить, правильно ли установлен этот модуль?
Ответы
Ответ 2
Мой обычный рабочий процесс - использовать virtualenv, чтобы иметь дистрибутив Python с обновленными пакетами.
В этой среде вы можете установить и обновить все пакеты, которые вам нужны, pip и без каких-либо вызовов sudo.
Итак, если вам нужно только SciPy (и NumPy):
$ sudo apt-get install python-virtualenv python-pip
$ sudo apt-get build-dep python-numpy python-scipy
$ # Create virtualenv in home
$ virtualenv .myenv
$ # Activate the virtualenv
$ source .myenv/bin/activate
(myenv)$ pip install -U numpy
(myenv)$ pip install -U scipy
(Если у вас нет доступа root, вы можете установить virtualenv и pip, как описано здесь. зависимостей NumPy и SciPy.)
Вы можете включить source .myenv/bin/activate в свой .bash_profile, и ваша оболочка всегда начнет с этой среды. Если вы используете файлы требований, легко установить и поддерживать те же среды на всех ваших машинах.
Ответ 3
Была та же проблема. Для меня работали следующие:
sudo apt-get install libblas-dev
sudo apt-get install liblapack-dev
sudo apt-get install gfortran
Ответ 4
Вам следует загрузить и установить Atlas. После этого повторите установку SciPy.
Другим вариантом будет apt-get install более старая версия. Это автоматически установит все зависимости; а затем установить новый вручную. Это приведет к тому, что на вашем компьютере будут две библиотеки, наиболее вероятно одна из /usr/share/pyshared, а другая - где-то под /usr/local, но вы можете убедиться, какой из них загружен, изменив путь загрузки модуля.
Кроме того, если вы ommit --prefix=/usr/local, при установке более новой версии поверх старой, она просто будет перезаписана, а управление трафиком не потребуется.
Ответ 5
Вы пытаетесь собрать SciPy из исходного кода.
Если вы просто хотите установить SciPy, используйте эту команду:
sudo apt-get install python-scipy
Ответ 6
У меня была та же проблема, что и OP (на Red Hat Linux 5.7 для меня, да, я знаю это старое), и все было исправлено устанавливая заголовки ATLAS (и "статические библиотеки", это говорит) через:
yum install atlas-devel
Ответ 7
Для Fedora 20:
pip install virtualenv virtualenvwrapper
mkvirtualenv scipy_project
sudo yum-buildep scipy
pip install scipy
Надеюсь, это поможет!